miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse :: Contigs




EST name EST sequence
gi|304527746|gb|HO327148.1|HO327148 AGTTAATGAAGATTGCAAAGACATACAACTTGGCGGTAATTTGCCTATCATGTTTATGAAGGGCGCGCACTTGTGATGCA
GCAACTACCGTCATGTTTCTTTTCTTTTGTACAGATTTTTAGTTCATTTTCCCACTAAAGGTCATCTACGGTTAAACTAG
TGAGAAAGAGAAACCCCACCTTCTGAACTGAACTTGATTAGTTATATGATGTATGAATTTCATAAAAACCAAATGTCTGA
ATTGCTAAGCTAACTATCTTATTCTTTCTTCAAATTAAAGATGATTGTATGTTTAGGTAAGTAGGTAGAGATTGTTTTAG
CTTTGTCCTAAGTCAAACTTCTTTAGCTTTGACCAAGTTTATAGAAAAATACATATATATCTTCAATATCAAACTAGTTT
CAGTAGATAGACCATGAAATATATTTTCATGGTGCATTATATTTGATATTTTAGGTGTTAATATATTTTCTATAAACTTT
GTCAAATTTAGACATGTTTGACTTGGACAAAGCTAATACAACCCATTATTTGGAGCGGAGGGAGGAAGGATTTTAATGAG
GCTATCAGACTTATCATCTTGTTTTGTTGAGCAGTTGTCTTGTTGAACCAAGTCACTACTAAATTTACAGAAGGATCATT
TCAATTGACTCTTGCTCTAGGTGACAGCTGGTCCCACTCGTGCACAAATCGACTGATTCTGTACTGGAATGGGAATGATC
GGTATGCATACCTGGACAAATCTCCTTCACTTCCAGTAGCTTCAGCTCCATATGCAGTGACAGGCAAAGGGGGTGGA




Most similar to sp|Q8GXF0|RA51C_ARATH

>BLASTX 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>sp|Q8GXF0|RA51C_ARATH DNA repair protein RAD51 homolog 3
           OS=Arabidopsis thaliana GN=RAD51C PE=1 SV=2
          Length = 363

 Score =  122 bits (306), Expect = 3e-27
 Identities = 58/76 (76%), Positives = 66/76 (86%)
 Frame = +3

Query: 564 IRLIILFC*AVVLLNQVTTKFTEGSFQLTLALGDSWSHSCTNRLILYWNGNDRYAYLDKS 743
           ++L   F  AVVLLNQVTTKF+EGSFQL LALGDSWSHSCTNR+ILYWNG++RYAY+DKS
Sbjct: 274 MKLAKKFSLAVVLLNQVTTKFSEGSFQLALALGDSWSHSCTNRVILYWNGDERYAYIDKS 333

Query: 744 PSLPVASAPYAVTGKG 791
           PSLP ASA Y VT +G
Sbjct: 334 PSLPSASASYTVTSRG 349